Leave empty if BAM files are in the same folders as projects.

Somatic variant calling

Pattern for variant file:

Pattern for tumor BAM files:

Pattern for normal BAM files:

Germline variant calling

Pattern for variant file:

Pattern for normal BAM files:

Fusion genes detection

Pattern for fusion table file:

Pattern for tumor BAM files:

Pattern for chimeric BAM files:

Genome for IGV snapshot:

Expression profile

Reference tissues (GTEx/HPA):

Select reference genome: